SLMSuite: a suite of algorithms for segmenting genomic profiles
نویسندگان
چکیده
منابع مشابه
Algorithms for Segmenting Time Series
As with most computer science problems, representation of the data is the key to ecient and eective solutions. Piecewise linear representation has been used for the representation of the data. This representation has been used by various researchers to support clustering, classication, indexing and association rule mining of time series data. A variety of algorithms have been proposed to obtain...
متن کاملBEDTools: a flexible suite of utilities for comparing genomic features
MOTIVATION Testing for correlations between different sets of genomic features is a fundamental task in genomics research. However, searching for overlaps between features with existing web-based methods is complicated by the massive datasets that are routinely produced with current sequencing technologies. Fast and flexible tools are therefore required to ask complex questions of these data in...
متن کاملGIST: Genomic island suite of tools for predicting genomic islands in genomic sequences
UNLABELLED Genomic Islands (GIs) are genomic regions that are originally from other organisms, through a process known as Horizontal Gene Transfer (HGT). Detection of GIs plays a significant role in biomedical research since such align genomic regions usually contain important features, such as pathogenic genes. We have developed a use friendly graphic user interface, Genomic Island Suite of To...
متن کاملA Suite of Simple Algorithms for Support Vector Machine Optimization
Recently Mangasarian and Musicant [1] suggested an interesting modification of the SVM objective with 2-norm loss, called the Lagrangian SVM (LSVM), that leads to a simple optimization algorithm. The LSVM algorithm is simple enough that it can applied even when the training size is large (millions of samples) and has been experimentally found to have generalization performance similar to standa...
متن کاملA Suite of Metaheuristic Algorithms for Static Weapon-Target Allocation
The problem of allocating defensive weapon resources to hostile targets is an optimization problem of high military relevance. The need for obtaining the solutions in real-time is often overlooked in existing literature. Moreover, there does not exist much research aimed at comparing the performance of different algorithms for weapon-target allocation. We have implemented a suite of metaheurist...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2017
ISSN: 1471-2105
DOI: 10.1186/s12859-017-1734-5